PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_12210V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 385aa MW: 41046.4 Da PI: 9.021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_12210V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.3e-09	4	24	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 Cr+f+r G C++G rCkF H Pp3c7_12210V3.1.p 4 QVCRDFQR-GSCRFGTRCKFLH 24 68****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.9E-6	1	26	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.784	1	27	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-7	3	24	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.18E-5	3	27	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-7	4	25	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSRQVCRDFQ RGSCRFGTRC KFLHQTGSAP QQQNAFNSGP KQTQPGFGTN RFGAFNNAPN 60 YFNNQRTTQP QSTAPKDHRC GNPKVCQDQI KEDISTEQPT FWRLTSYAHW KFLPNDICGD 120 VSPEELRALA YDSGKQGLPF QEIVRREHSM NAAKIAEFET LQRNPYRGPA TQMSGGTPLG 180 QTQPSPFTSH TQTGFGFGTQ NQSAAPAGSF GQPQLMFGVP VTTPQAGSGF SNAFNKTPTN 240 PNSLQSSGFG QYSQLGQSGF GSAPKSVFGS QTITPFGTGI NVFGGGFGTP AAAQPAGTTN 300 SVNFGTSPFT TLGGFGTSPF AIPAANPQPS APAVIPPATF NTLPLGTAPP STKQTAIGVD 360 GIWQKETWKL GEIPEEEPPE SIRY*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSRQVCRDFQ RGSCRFGTRC KFLHQTGSAP QQQNAFNSGP KQTQPGFGTN RFGAFNNAPN  60
YFNNQRTTQP QSTAPKDHRC GNPKVCQDQI KEDISTEQPT FWRLTSYAHW KFLPNDICGD  120
VSPEELRALA YDSGKQGLPF QEIVRREHSM NAAKIAEFET LQRNPYRGPA TQMSGGTPLG  180
QTQPSPFTSH TQTGFGFGTQ NQSAAPAGSF GQPQLMFGVP VTTPQAGSGF SNAFNKTPTN  240
PNSLQSSGFG QYSQLGQSGF GSAPKSVFGS QTITPFGTGI NVFGGGFGTP AAAQPAGTTN  300
SVNFGTSPFT TLGGFGTSPF AIPAANPQPS APAVIPPATF NTLPLGTAPP STKQTAIGVD  360
GIWQKETWKL GEIPEEEPPE SIRY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3861	0.0	gametophore\| protonema\| sporophyte

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	3e-43	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_12210V3.1.p